Bioinformatics and Systems Biology Graduate Students

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Ammal Abbasi

Program: Bioinformatics and Systems Biology


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Maria Luisa Amaral

Program: Bioinformatics and Systems Biology

Advisor(s): Bing Ren

Special Funding/Awards:

2018-21 Trainee on NIH Training Grant in Bioinformatics

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Fatemeh Amrollahi

Program: Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics


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Ethan Armand

Program: Bioinformatics and Systems Biology


Erick Armingol

Erick Armingol

Program: Bioinformatics and Systems Biology

Advisor(s): Nathan E. Lewis

Research Interests: Metabolic modeling and multicellular interactions to predict phenotypes

Degrees:

B.S., Molecular Biotechnology, Universidad de Chile, 2013
Engineer in Molecular Biotechnology, Universidad de Chile, 2015

Special Funding/Awards:

2018-22 Becas Chile - CONICYT (Chilean Government Scholarship)
2018-22 Fulbright Scholarship
2023 Siebel Scholar

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Jessica Au

Program: Bioinformatics and Systems Biology

Degrees:

B.S., Mathematics and Scientific Computation- Biology emphasis, University of California, Davis, 2017
Minor, Bioinformatics and Quantitative Biology, University of California, Davis, 2017

Hratch Baghdassarian

Hratch Baghdassarian

Program: Bioinformatics and Systems Biology

Advisor(s): Nathan E. Lewis

Research Interests: Cell-Cell Communication; Genome-Scale Modeling; Mammalian Systems Biology

Degrees:

B.S., Bioengineering, University of California, Berkeley, 2017
B.S., Economics, University of California, Berkeley, 2017

Special Funding/Awards:

2018-20 Trainee on NIH Training Grant in Bioinformatics
2022-2023 Oak Ridge Institute for Science and Education (ORISE) Fellowship: Research Participation Program at the U.S. Food and Drug Administration (FDA)

Arjana Begzati

Arjana Begzati

Program: Bioinformatics and Systems Biology

Research Interests: Metabolomics

Degrees:

B.A., Molecular and Cell Biology, University of California, Berkeley, 2019

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Dante Bolzan

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2021-23 Trainee on NIH Training Grant in Bioinformatics


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Aaron Boussina

Program: Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics

Special Funding/Awards:

2021-22 Trainee on National Library of Medicine (NLM) Training Grant Fellowship Program


Lauryn Bruce

Lauryn Bruce

Program: Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics

Special Funding/Awards:

2020-21 Trainee on National Library of Medicine (NLM) Training Grant Fellowship Program

Owen Chapman

Owen Chapman

Advisor(s): Jill Mesirov

Degrees:

B.A., Computer Science, Pomona College, 2017

Special Funding/Awards:

2017-20 Trainee on National Library of Medicine (NLM) Training Grant Fellowship Program

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Daisy Chen

Program: Bioinformatics and Systems Biology

Advisor(s): Elizabeth Winzeler

Degrees:

B.S., Computer Science, University of California, Los Angeles, 2021
B.S., Computational and Systems Biology, University of California, Los Angeles, 2021

Special Funding/Awards:

2021-23 Trainee on NIH Training Grant in Bioinformatics

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Chien-Ju Chen

Program: Bioinformatics and Systems Biology


Michael Cuoco

Michael Cuoco

Program: Bioinformatics and Systems Biology

Advisor(s): Fred (Rusty) Gage, Eran Mukamel

Research Interests: Genomics approaches to understanding retrotransposon activity in the human brain

Degrees:

B.S., Molecular and Cellular Biology, Trinity College-Connecticut, 2017

Special Funding/Awards:

2020-21 Trainee on NIH Training Grant in Bioinformatics

NSF Graduate Research Fellowship

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Jenny Dong

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2022-23 Trainee on NIH Training Grant in Bioinformatics


Xiaomi Du

Xiaomi Du

Program: Bioinformatics and Systems Biology

Degrees:

B.S., Biology, Caltech, 2016

Special Funding/Awards:

2019-20 Trainee on NIH Training Grant in Bioinformatics

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Vicente Fajardo Rosas

Program: Bioinformatics and Systems Biology


Yi Fu

Yi Fu

Program: Bioinformatics and Systems Biology

Advisor(s): Ruth Williams

Research Interests: Stochastic Processes, Epigenetics

Degrees:

B.S., Mathematics (Applied), University of California, San Diego, 2016
B.S., Biology with specialization in Bioinformatics, University of California, San Diego, 2016

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Lia Gale

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2022-23 Trainee on NIH Training Grant in Bioinformatics


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Aidan Glina

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2021-22 Trainee on NIH Training Grant in Bioinformatics


Karla P. Godinez-Macias

Karla P. Godinez-Macias

Program: Bioinformatics and Systems Biology

Advisor(s): Elizabeth Winzeler, Nathan E. Lewis

Degrees:

B.S., Computer Science, Universidad Autónoma de Baja California, 2016
M.S., Bioinformatics, The University of Texas at El Paso, 2019

Caitlin Guccione

Caitlin Guccione

Program: Bioinformatics and Systems Biology

Advisor(s): Kit Curtius, Rob Knight

Research Interests: Cancer microbiome & mathematical modeling

Degrees:

B.S., Applied Mathematics, University of Rhode Island
B.A., Computer Science, University of Rhode Island
M.S., Applied Mathematics, University of Rhode Island

Special Funding/Awards:

2020-21 Trainee on NIH Training Grant in Bioinformatics

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Carlos Guzman

Program: Bioinformatics and Systems Biology

Advisor(s): Sven Heinz, Christopher Benner

Research Interests: Gene regulation, enhancer biology, chromatin regulation

Degrees:

B.S., Biology, University of Texas-Pan American, 2013
M.S., Biology, University of Texas-Pan American, 2015

Special Funding/Awards:

2017-19 Trainee on NIH Training Grant in Bioinformatics
​Sloan Scholars Fellowship
Competitive EDGE Fellowship
2019 Ford Foundation Predoctoral Fellowship

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Daniel Hakim

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2018-20 Trainee on NIH Training Grant in Bioinformatics


Jennifer Havens

Jennifer Havens

Program: Bioinformatics and Systems Biology

Advisor(s): Joel Wertheim

Research Interests: Virus evolution and phylogenetics, molecular epidemiology

Degrees:

B.S., Mathematical and Computational Biology, Harvey Mudd College, 2018

Hsuan-Lin Her

Hsuan-Lin Her

Program: Bioinformatics and Systems Biology

Advisor(s): Gene Yeo

Research Interests: RNA-binding protein function

Degrees:

M.D., Taipei Medical University, 2019

Special Funding/Awards:

J Yang Foundation Fellowship

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Ryan Hillary

Program: Bioinformatics and Systems Biology

Advisor(s): Christopher Benner

Research Interests: Transcription Initiation and Regulation, Enhancer Biology, Gene Regulation

Degrees:

B.S., Bioinformatics, Brigham Young University, 2014

Pratibha Jagannatha

Pratibha Jagannatha

Program: Bioinformatics and Systems Biology

Advisor(s): Gene Yeo

Research Interests: Transcriptomics

Degrees:

B.S. Biomolecular Engineering

Special Funding/Awards:

2019-21 Trainee on NIH Training Grant in Bioinformatics

ARCS Scholar

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Jeff Jaureguy

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2020-21 Trainee on NIH Training Grant in Bioinformatics


Bojing Jia

Bojing Jia

Program: Bioinformatics and Systems Biology

Advisor(s): Bing Ren, Albert Hsiao

Research Interests: Spatial transcriptomics, computer vision

Degrees:

B.Sc., Quantitative Biology, McGill University, 2015

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Brian Johnson

Program: Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics

Special Funding/Awards:

2021-22 Trainee on National Library of Medicine (NLM) Training Grant Fellowship Program


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Adam Jussila

Program: Bioinformatics and Systems Biology


Azhar Khandekar

Azhar Khandekar

Program: Bioinformatics and Systems Biology

Degrees:

B.S., Biochemistry, University of Washington, 2016

Special Funding/Awards:

National Cancer Institute's Cancer Research Training Award

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Jihoon Kim

Program: Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics


Adam Klie

Adam Klie

Program: Bioinformatics and Systems Biology

Advisor(s): Hannah Carter

Degrees:

B.S., Bioengineering: Bioinformatics, University of California, San Diego, 2017

Special Funding/Awards:

2019-21 Trainee on NIH Training Grant in Bioinformatics

Emily Kobayashi

Emily Kobayashi

Program: Bioinformatics and Systems Biology

Degrees:

B.S., Bioinformatics, University of California, Santa Cruz, 2019

Special Funding/Awards:

2019-21 Trainee on NIH Training Grant in Bioinformatics


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Zane Koch

Program: Bioinformatics and Systems Biology


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Eric Kofman

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2019-21 Trainee on NIH Training Grant in Bioinformatics


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Jonathan Lam

Program: Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics

Special Funding/Awards:

2020-21 Trainee on National Library of Medicine (NLM) Training Grant Fellowship Program


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David Laub

Program: Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics

Special Funding/Awards:

2021-22 Trainee on National Library of Medicine (NLM) Training Grant Fellowship Program


Ko-Han Lee

Ko-Han Lee

Program: Bioinformatics and Systems Biology

Advisor(s): Hannah Carter

Research Interests: Cancer immunology

Degrees:

M.D., National Taiwan University, 2019

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Adam Li

Program: Bioinformatics and Systems Biology


Clarence Mah

Clarence Mah

Program: Bioinformatics and Systems Biology

Advisor(s): Hannah Carter, Gene Yeo

Research Interests: Transcriptomics, RNA regulation, RNA localization, reproducible research

Degrees:

B.S., Bioengineering: Bioinformatics, University of California, San Diego 2016

Special Funding/Awards:

NSF Graduate Research Fellowship Program

UCSD Genetics Training Program

Arya Massarat

Arya Massarat

Program: Bioinformatics and Systems Biology

Research Interests: Fine-mapping, Reproducibility

Degrees:

B.S., Mathematical and Computational Biology, Harvey Mudd College, 2020

Special Funding/Awards:

2020-21 Trainee on NIH Training Grant in Bioinformatics

NSF Graduate Research Fellowship

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Douglas Meyer

Program: Bioinformatics and Systems Biology

Degrees:

B.S., Molecular Cell and Developmental Biology, UCLA, 2017

Hannah Mummey

Hannah Mummey

Program: Bioinformatics and Systems Biology

Advisor(s): Kyle Gaulton

Degrees:

B.S., Biochemistry, Wellesley College, 2020

Special Funding/Awards:

2020-21 Trainee on NIH Training Grant in Bioinformatics

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Jacklyn Newsome

Program: Bioinformatics and Systems Biology


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Jennifer Nguyen

Program: Bioinformatics and Systems Biology


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Adam Officer

Program: Bioinformatics and Systems Biology


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Jonathan Pekar

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2023 Siebel Scholar


Daniela Perry

Daniela Perry

Program: Bioinformatics and Systems Biology

Degrees:

B.S., Statistics, Cornell University

Special Funding/Awards:

2021-23 Trainee on NIH Training Grant in Bioinformatics


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Timothy Pham

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2020-21 Trainee on National Library of Medicine (NLM) Training Grant Fellowship Program


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Anh Pham

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2021-22 Sigma Delta Epsilon Tau Chapter Fellowship


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Avery Pong

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2022-23 Trainee on NIH Training Grant in Bioinformatics


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Anna Qi

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2022-23 Trainee on NIH Training Grant in Bioinformatics


Gege Qian

Gege Qian

Program: Bioinformatics and Systems Biology

Degrees:

B.S., Biochemistry and Cell Biology and Applied Math, University of California San Diego, 2019
M.S., Immunology, Harvard Medical School, 2021

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Eleonora Rachtman

Program: Bioinformatics and Systems Biology


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Gibraan Rahman

Program: Bioinformatics and Systems Biology


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Joaquin Reyna

Program: Bioinformatics and Systems Biology

Degrees:

Bioengineering: Bioinformatics Bsc

Special Funding/Awards:

2018-20 Trainee on NIH Training Grant in Bioinformatics

Charles-Alexandre Roy

Charles-Alexandre Roy

Program: Bioinformatics and Systems Biology

Advisor(s): Jonathan Sebat

Degrees:

B.S., Bioengineering, University of Maine, 2019
Minor, Chemistry, University of Maine, 2019
Minor, Cell and Molecular Biology, University of Maine, 2019
Minor, Nanotechnology, University of Maine, 2019
Minor, Microbiology, University of Maine, 2019

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Molly Sacks

Program: Bioinformatics and Systems Biology

Advisor(s): Jonathan Sebat

Degrees:

B.A., Applied Mathematics, Harvard University, 2022

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Dominic Schenone

Program: Bioinformatics and Systems Biology

Degrees:

B.S, Bioengineering, University of California, Santa Cruz, 2017

Timothy Sears

Timothy Sears

Program: Bioinformatics and Systems Biology

Advisor(s): Hannah Carter

Research Interests: Cancer immunotherapy response prediction

Degrees:

B.S., Biochemistry and Molecular Biology, UC Santa Barbara, 2020

Special Funding/Awards:

2021-22 Trainee on NIH Training Grant in Bioinformatics

Omar Shanta

Omar Shanta

Program: Bioinformatics and Systems Biology

Advisor(s): Jonathan Sebat

Degrees:

B.S., Electrical Engineering, University of California, Irvine, 2015
M.S., Electrical and Computer Engineering, University of California, San Diego, 2019

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Sam Shen

Program: Bioinformatics and Systems Biology

Advisor(s): Wei Wang

Degrees:

B.ASc., Biomedical Engineering (Bioinformatics Track), University of British Columbia, 2021

Severine Soltani

Severine Soltani

Program: Bioinformatics and Systems Biology

Advisor(s): Benjamin Smarr

Degrees:

B.S., Cognitive Science w/ Specialization in Machine Learning and Neural Computation, University of California, San Diego, 2020
Minor, Mathematics, University of California, San Diego, 2020

Special Funding/Awards:

2021-23 Trainee on NIH Training Grant in Bioinformatics

Jesse Solvason

Jesse Solvason

Program: Bioinformatics and Systems Biology

Advisor(s): Emma Farley

Research Interests: Synthetic Biology, Transcriptional Regulation, Sequencing Based High-Throughput Screens

Degrees:

B.S. Molecular, Cellular, Developmental Biology; Minor in Chemistry

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Kimberly Spaulding

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2021-22 Trainee on NIH Training Grant in Bioinformatics

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James Talwar

Program: Bioinformatics and Systems Biology


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Juan Tibocha Bonilla

Program: Bioinformatics and Systems Biology


Felipe Vasquez Castro

Felipe Vasquez Castro

Program: Bioinformatics and Systems Biology

Research Interests: Metabolomics, bile acids

Degrees:

B.S., Chemistry, Universidad de Costa Rica, 2020

Daniella Vo

Daniella Vo

Program: Bioinformatics and Systems Biology

Degrees:

B.S., Bioinformatics, University of California, San Diego, 2020

Special Funding/Awards:

2021-22 Trainee on NIH Training Grant in Bioinformatics

Yotam Voskoboynik

Yotam Voskoboynik

Program: Bioinformatics and Systems Biology

Degrees:

B.S, Computer Science, University of California, Santa Cruz
B.A, Film and Digital Media, University of California, Santa Cruz

Xingzhao Wen

Xingzhao Wen

Program: Bioinformatics and Systems Biology

Advisor(s): Sheng Zhong

Research Interests: RNA interactome, Genome organization

Degrees:

B.S., Biomedical Engineering, Southeast University, China, 2018

Alexander Wenzel

Alexander Wenzel

Program: Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics

Advisor(s): Jill Mesirov

Research Interests: Bulk and single cell RNA-seq algorithms development and analysis

Degrees:

B.S., Computer Science, Northwestern University, 2017

Special Funding/Awards:

Ruth L. Kirschstein Predoctoral Individual National Research Service Award (F31)

2017-20 Trainee on National Library of Medicine (NLM) Training Grant Fellowship Program

Cancer Cell Map Initiative: Cancer Systems Biology Training Program Award

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Sarah Wright

Program: Bioinformatics and Systems Biology

Advisor(s): Trey Ideker

Research Interests: Network genetics

Degrees:

M.Eng. Biomedical Engineering, Massachusetts Institute of Technology, 2016
B.S. Biological Engineering, Massachusetts Institute of Technology, 2017

Cynthia Wu

Cynthia Wu

Program: Bioinformatics and Systems Biology

Advisor(s): Melissa Gymrek, Alon Goren

Degrees:

B.S., Bioinformatics, University of California, San Diego, 2017
Minor, Computer Science, University of California, San Diego, 2017
M.S., Computer Science, University of California, San Diego, 2020

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Tianyao Xu

Program: Bioinformatics and Systems Biology

Advisor(s): Alon Goren, Christopher Benner

Degrees:

B.S., Bioengineering: Bioinformatics, University of California, San Diego, 2021
B.S., Mathematics (Applied), University of California, San Diego, 2021


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Grace Yu

Program: Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics

Degrees:

B.S., Computer Science, Case Western Reserve University, 2021

Special Funding/Awards:

2022-23 Trainee on National Library of Medicine (NLM) Training Grant Fellowship Program

Nancy Yuan

Nancy Yuan

Program: Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics

Degrees:

M.S., Biology, UC San Diego, 2017

B.S., Biology, University of Texas at Austin, 2015

B.A., History, University of Texas at Austin, 2014

Special Funding/Awards:

2018-21 Trainee on National Library of Medicine (NLM) Training Grant Fellowship Program

2022-23 TRDRP (Tobacco-Related Disease Research Program) Predoctoral Research Fellowship

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Jessica Zhou

Program: Bioinformatics and Systems Biology

Degrees:

B.S., Biomedical Engineering, University of Southern California, 2017

Special Funding/Awards:

2017-18 Trainee on NIH Training Grant in Bioinformatics
2019-20 Fulbright Study/Research Award