RF1 knockout allows ribosomal incorporation of unnatural amino acids at multiple sites.

TitleRF1 knockout allows ribosomal incorporation of unnatural amino acids at multiple sites.
Publication TypeJournal Article
Year of Publication2011
AuthorsJohnson DBF, Xu J, Shen Z, Takimoto JK, Schultz MD, Schmitz RJ, Xiang Z, Ecker JR, Briggs SP, Wang L
JournalNat Chem Biol
Volume7
Issue11
Pagination779-86
Date Published2011 Nov
ISSN1552-4469
KeywordsAmino Acid Sequence, Amino Acids, Codon, Terminator, Escherichia coli, Escherichia coli Proteins, Gene Deletion, Gene Expression Regulation, Bacterial, Genomics, Models, Molecular, Peptide Termination Factors, Protein Biosynthesis, Ribosomes
Abstract

Stop codons have been exploited for genetic incorporation of unnatural amino acids (Uaas) in live cells, but their low incorporation efficiency, which is possibly due to competition from release factors, limits the power and scope of this technology. Here we show that the reportedly essential release factor 1 (RF1) can be knocked out from Escherichia coli by 'fixing' release factor 2 (RF2). The resultant strain JX33 is stable and independent, and it allows UAG to be reassigned from a stop signal to an amino acid when a UAG-decoding tRNA-synthetase pair is introduced. Uaas were efficiently incorporated at multiple UAG sites in the same gene without translational termination in JX33. We also found that amino acid incorporation at endogenous UAG codons is dependent on RF1 and mRNA context, which explains why E. coli tolerates apparent global suppression of UAG. JX33 affords a unique autonomous host for synthesizing and evolving new protein functions by enabling Uaa incorporation at multiple sites.

DOI10.1038/nchembio.657
PubMed URLhttp://www.ncbi.nlm.nih.gov/pubmed/21926996?dopt=Abstract
PMCPMC3201715
Alternate TitleNat. Chem. Biol.
PubMed ID21926996